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RESPIRATORY

Atypical Pneumonia

Bordetella pertussis
Chlamydia pneumoniae
Legionella pneumophila
Mycoplasma pneumoniae

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, isolate, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab

RESPIRATORY

Bacterial Pneumonia

Acinetobacter baumannii
Bordetella pertussis
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (type B)
Klebsiella spp.
Legionella pneumophila
Moraxella catarrhalis
Mycoplasma pneumoniae
Neisseria meningitidis
Pseudomonas aeruginosa
Staphylococcus aureus
MRSA1
PVL2 gene
Streptococcus pneumoniae
Streptococcus pyogenes 
(AA)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, isolate, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab

RESPIRATORY

COVID-19

SARS-CoV-2
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (type B)
SARS-CoV-2
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (type B)

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Throat Swab | Sputum Specimen Swab

Diatherix Eurofins SARS-CoV-2 virus has not been FDA cleared or approved. This test has been authorized by FDA under an EUA for use by authorized laboratories, and has been authorized only for the detection of nucleic acid from SARS-CoV-2, not for any other viruses or pathogens. The test is only authorized for the duration of the declaration that circumstances exist justifying the authorization of emergency use of in vitro diagnostic tests for detection and/or diagnosis of COVID-19under Section 564(b)(1) of the Act, 21 U.S.C. § 360bbb-3(b)(1), unless the authorization is terminated or revoked sooner.

RESPIRATORY

Ear Nose & Throat

Acinetobacter baumannii
Chlamydia pneumoniae
Enterobacter aerogenes
Enterobacter cloacae
Haemophilus influenzae
Haemophilus influenzae (typeB)
Klebsiella spp.
Moraxella catarrhalis
Mycoplasma pneumoniae
Proteus mirabilis
Pseudomonas aeruginosa
Staphylococcus aureus
Haemophilus influenzae (typeB)
MRSA1
PVL2 gene
Streptococcus dysgalactiae (Group C, G)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, isolate, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | Ear Swab | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Plural Fluid | Sputum Specimen Swab | Throat Swab

RESPIRATORY

Flu Plus

SARS-CoV-2
Influenza A
A(H1N1)pdm09
Influenza B
Respiratory Syncytial Virus (A & B)
Human Rhinovirus/Enterovirus

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

BronchialAspirate | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab |Pleural Fluid | Sputum Specimen Swab | Throat Swab

Diatherix Eurofins SARS-CoV-2 virus has not been FDA cleared or approved. This test has been authorized by FDA under an EUA for use by authorized laboratories, and has been authorized only for the detection of nucleic acid from SARS-CoV-2, not for any other viruses or pathogens. The test is only authorized for the duration of the declaration that circumstances exist justifying the authorization of emergency use of in vitro diagnostic tests for detection and/or diagnosis of COVID-19under Section 564(b)(1) of the Act, 21 U.S.C. § 360bbb-3(b)(1), unless the authorization is terminated or revoked sooner.

RESPIRATORY

Influenza

Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3

3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Throat Swab | Sputum Specimen Swab

RESPIRATORY

Pediatric Respiratory

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Bocavirus
Human Metapneumovirus
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3
Respiratory Syncytial Virus (A & B)
Bordetella pertussis
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (typeB)
Moraxella catarrhalis
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C, G)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A)

3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Throat Swab

RESPIRATORY

Pharyngitis

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3
Respiratory Syncytial Virus (A & B)
Chlamydia pneumoniae
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C, G)
Streptococcus pyogenes (Group A)

3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Bronchial Aspirate | Pleural Fluid | Sputum Specimen | Throat Swab

RESPIRATORY

Pharyngitis Plus

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3
Respiratory Syncytial Virus (A and B)
Arcanobacterium haemolyticum
Chlamydia pneumoniae
Fusobacterium necrophorum
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C, G)
Streptococcus pyogenes (Group A)

3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Bronchial Aspirate | Pleural Fluid | Sputum Specimen | Throat Swab

RESPIRATORY

Respiratory Infection

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Bocavirus
Human Metapneumovirus
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3
Respiratory Syncytial Virus (A & B)
Acinetobacter baumannii
Bordetella pertussis
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (typeB)
Klebsiella spp.
Legionella pneumophila
Moraxella catarrhalis
Mycoplasma pneumoniae
Neisseria meningitidis
Pseudomonas aeruginosa
Staphylococcus aureus
MRSA 1
PVL 2 gene
Streptococcus pneumoniae
Streptococcus pyogenes (Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin
3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Throat Swab

RESPIRATORY

SARS-CoV-2

SARS-CoV-2

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Throat Swab

Diatherix Eurofins SARS-CoV-2 virus has not been FDA cleared or approved. This test has been authorized by FDA under an EUA for use by authorized laboratories, and has been authorized only for the detection of nucleic acid from SARS-CoV-2, not for any other viruses or pathogens. The test is only authorized for the duration of the declaration that circumstances exist justifying the authorization of emergency use of in vitro diagnostic tests for detection and/or diagnosis of COVID-19under Section 564(b)(1) of the Act, 21 U.S.C. § 360bbb-3(b)(1), unless the authorization is terminated or revoked sooner.

RESPIRATORY

Upper Respiratory Infection

3 Types reported separately

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Bocavirus
Human Metapneumovirus
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4) 3
Respiratory Syncytial Virus (A & B)
Bordetella pertussis
Chlamydia pneumoniae
Haemophilus influenzae
Haemophilus influenzae (typeB)
Moraxella catarrhalis
Mycoplasma pneumoniae
Streptococcus dysgalactiae (Group C, G)
Streptococcus pneumoniae
Streptococcus pyogenes (Group A)

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Throat Swab

RESPIRATORY

Veristrep

Streptococcus pyogenes (Group A)
Streptococcus dysgalactiae (Group C,G)
Streptococcus pneumoniae
Haemophilus influenzae
Haemophilus influenzae (type B)
Moraxella catarrhalis
Mycoplasma pneumoniae

Acceptable Specimen Sources

Isolate, nasal, nasopharyngeal, oropharyngeal, pharyngeal, throat

Specimen Collection Methods:

Nasal Swab | NP Aspirate/Wash | Nasopharyngeal Swab | Throat Swab

RESPIRATORY

Viral Respiratory

Adenovirus
Coronavirus (229E, HKU1, NL63, OC43) 3
Human Bocavirus
Human Metapneumovirus
Human Rhinovirus/Enterovirus
Influenza A
A(H1N1)pdm09
Influenza B
Parainfluenza Virus (1, 2, 3, 4)3
Respiratory Syncytial Virus (A & B)

3 Types reported separately

Acceptable Specimen Sources

Bronchial, bronchial washing, bronchoalveolar lavage, ear, eye, nares, nasal, nasopharyngeal, oral, oropharyngeal, pericardial, pharyngeal, pleural, sputum, throat

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Throat Swab

GENITAL HEALTH

Bacteria Vaginosis

Atopobium vaginae
Gardnerella vaginalis
Mycoplasma genitalium
Mycoplasma hominis
Ureaplasma urealyticum

Acceptable Specimen Sources

Anal, cervical, cervical-thinprep, endocervical, endocervical-thinprep, lesion, oral, oropharyngeal, penis, pharyngeal, rectal, throat, ulcer, urethra, urine, vaginal, vulva, (Any source is acceptable for an infant 2 months old or younger)

Specimen Collection Methods:

Endocervical Swab | General Swab | Rectal Swab | ThinPrep® Pap Solution | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

GENITAL HEALTH

Candidiasis

Candida albicans
Candida glabrata
Candida krusei
Candida parapsilosis
Candida tropicalis

Acceptable Specimen Sources

Anal, bronchial, bronchial washing, bronchoalveolar lavage, cervical, cervical-thinprep, ear, endocervical, endocervical-thinprep, eye, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pericardial (heart), pharyngeal, pleural, rectal, sputum, stool swab, throat, ulcer, urethra, urine, vaginal, vulva, wound, (Any source is acceptable for an infant 2 months old or younger)

Specimen Collection Methods:

Bronchial Aspirate | Endocervical Swab | General Swab | Nasal Swab | Nasopharyngeal  Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Rectal Swab | Sputum Specimen Swab | Stool Specimen Swab | ThinPrep® Pap Solution | Urine Specimen | Vaginal Swab

GENITAL HEALTH

CT+ NG + Trichomonas

Chlamydia trachomatis
Neisseria gonorrhoeae
Trichomonas vaginalis

Acceptable Specimen Sources

Anal, cervical, cervical-thinprep, endocervical, endocervical-thinprep, lesion, oral, oropharyngeal, penis, pharyngeal, rectal, throat, ulcer, urethra, urine, vaginal, vulva, (Any source is acceptable for an infant 2 months old or younger)

Specimen Collection Methods:

General Swab | Endocervical Swab | Rectal Swab | Throat Swab | ThinPrep® Pap Solution | Urethral Swab | Urine Specimen | Vaginal Swab

GENITAL HEALTH

Herpes Simplex Virus

Herpes Simplex Virus type 1
Herpes Simplex Virus type 2

Acceptable Specimen Sources

Anal, cervical, cervical-thinprep, endocervical, endocervical-thinprep, eye, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pharyngeal, rectal, throat, ulcer, urethra, urine, vaginal, vulva

NOTE: Certain organisms are intracellular; therefore, there must be enough human cells present to detect the organism. Eurofins Diatherix tests the specimen for human DNA to ensure that an adequate number of cells are present for a valid result.

ThinPrep® Pap Solution is stable for 30 days.

Specimen Collection Methods:

General Swab | Endocervical Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Rectal Swab | ThinPrep® Pap Solution | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

GENITAL HEALTH

HPV High Risk Typing

HPV High Risk types: 16, 18, 31, 33, 35, 39, 45, 51, 52, 53, 56, 58, 59, 67, 68

Acceptable Specimen Sources

Anal, cervical, cervical-thinprep, endocervical, endocervical-thinprep, oral, oropharyngeal, pharyngeal, rectal, throat, urethra, vaginal, vulva

Specimen Collection Methods:

Endocervical Swab | General Swab | ThinPrep® PapSolution | Throat Swab Rectal Swab | Vaginal Swab

GENITAL HEALTH

Sexually Transmitted Disease Virus

Atopobium vaginae
Chlamydia trachomatis
Gardnerella vaginalis
Mycoplasma genitalium
Mycoplasma hominis
Neisseria gonorrhoeae
Trichomonas vaginalis
Ureaplasma urealyticum

Acceptable Specimen Sources

Anal, cervical, cervical-thinprep, endocervical, endocervical-thinprep, lesion, oral, oropharyngeal, penis, pharyngeal, rectal, throat, ulcer, urethra, urine, vaginal, vulva

Specimen Collection Methods:

General Swab | Endocervical Swab | Rectal Swab | ThinPrep® Pap Solution | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

WOUNDS / SSTI

Infectious Disease

Acinetobacter baumannii
Citrobacter freundii
Enterobacter aerogenes
Enterobacter cloacae
Enterococcus faecalis
Enterococcus faecium
Vancomycin-resistant Enterococci (VRE)
Escherichia coli
Klebsiella spp.
Morganella morganii
Proteus mirabilis
Proteus vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
MRSA 1
PVL 2 gene
Staphylococcus lugdunensis
Streptococcus pyogenes
 (Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Abscess, anal, bronchial, bronchial washing, bronchoalveolar lavage, cervix, ear, eye, isolate, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pericardial, pharyngeal, pleural, rash, sputum, synovial, throat, ulcer, urethra, urine, vaginal, vulva, wound

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Rectal Swab | Sputum Specimen Swab | Synovial Fluid | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

WOUNDS / SSTI

Necrosis

Bacteroides spp.
Clostridium novyi/septicum
Clostridium perfringens
Kingella kingae
Staphylococcus aureus
MRSA 1
PVL 2 gene
Staphylococcus lugdunensis
Streptococcus pyogenes
 (Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Abscess, anal, bronchial, bronchial washing, bronchoalveolar lavage, cervix, ear, eye, isolate, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pericardial, pharyngeal, pleural, rash, rectal, sputum, stool swab, synovial, throat, ulcer, urethra, urine, vaginal, vulva, wound

Specimen Collection Methods:

Bronchial Aspirate | General Swab | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen Swab | Stool Swab Specimen | Synovial Fluid | Rectal Swab | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

WOUNDS / SSTI

Skin and Soft Tissue Infection

Acinetobacter baumannii
Bacteroides
spp.
Citrobacter freundii
Clostridium novyi/septicum
Clostridium perfringens
Enterobacter aerogenes
Enterobacter cloacae
Enterococcus faecalis
Enterococcus faecium
Vancomycin-resistant Enterococci (VRE)
Escherichia coli
Kingella kingae
Pseudomonas aeruginosa
Staphylococcus aureus
MRSA 1
PVL 2 gene
Staphylococcus lugdunensis
Streptococcus pyogenes
(Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Abscess, anal, bronchial, bronchial washing, bronchoalveolar lavage, cervix, ear, eye, isolate, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pericardial, pharyngeal, pleural, rash, sputum, synovial, throat, ulcer, urethra, urine, vaginal, vulva, wound

Specimen Collection Methods:

Bronchial Aspirate | General Swab (wound, etc.) | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal Swab | Pleural Fluid | Sputum Specimen | Synovial Fluid | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

WOUNDS / SSTI

Skin and Soft Tissue Infection Plus

Acinetobacter baumannii
Bacteroides
spp.
Citrobacter freundii
Clostridium novyi/septicum
Clostridium perfringens
Enterobacter aerogenes
Enterobacter cloacae
Enterococcus faecalis
Enterococcus faecium

Vancomycin-resistant Enterococci (VRE)
Escherichia coli
Kingella kingae
Klebsiella
spp.
Morganella morganii
Proteus mirabilis
Proteus vulgaris
Pseudomonas aeruginosa
Staphylococcus aureus
MRSA 1
PVL 2 gene
Staphylococcus lugdunensis
Streptococcus pyogenes
(Group A)

1 Methicillin-resistant Staphylococcus aureus
2 Panton-Valentine leukocidin

Acceptable Specimen Sources

Specimen Collection Methods:

Abscess, anal, bronchial, bronchial washing, bronchoalveolar lavage, cervix, ear, eye, isolate, lesion, nares, nasal, nasopharyngeal, oral, oropharyngeal, penis, pericardial, pharyngeal, pleural, rash, sputum, synovial, throat, ulcer, urethra, urine, vaginal, vulva, wound

Bronchial Aspirate | General Swab (wound, etc.) | Nasal Swab | Nasopharyngeal Aspirate/Wash | Nasopharyngeal  Swab | Pleural Fluid | Sputum Specimen | Synovial Fluid | Throat Swab | Urethral Swab | Urine Specimen | Vaginal Swab

WOUNDS / SSTI

Eruptive Skin Rash

Staphylococcus aureus
MRSA 1
Streptococcus pyogenes
Enterovirus group
Varicella zoster virus

1 Methicillin-resistant Staphylococcus aureus

Acceptable Specimen Sources

Lesion, rash, or unroofed vesicle swab

Specimen Collection Methods:

Lesion Swab

WOUNDS / SSTI

Eruptive Skin Rash + HSV

Staphylococcus aureus
MRSA 1
Streptococcus pyogenes
Enterovirus group
Herpes simplex virus type 1
Herpes simplex virus type 2
Varicella zoster virus

1 Methicillin-resistant Staphylococcus aureus

Acceptable Specimen Sources

Lesion, rash, or unroofed vesicle swab

Specimen Collection Methods:

Lesion Swab

WOUNDS / SSTI

Exanthem

Streptococcus pyogenes
Cytomegalovirus
Enterovirus group
Epstein-Barr virus
Measles virus
Parechovirus
Parvovirus B19
Varicella zoster virus

Acceptable Specimen Sources

Oropharyngeal, throat  

Specimen Collection Methods:

Throat Swab

WOUNDS / SSTI

Exanthem + Roseola

Streptococcus pyogenes
Cytomegalovirus
Enterovirus group
Epstein-Barr virus
Human herpesvirus 6
Human herpesvirus 7
Measles virus
Parechovirus
Parvovirus B19
Varicella zoster virus

Acceptable Specimen Sources

Oropharyngeal, throat  

Specimen Collection Methods:

Throat Swab

GASTROINTESTINAL

Gastrointestinal

Campylobacter jejuni
Clostridioides difficile
(toxin B gene)
Enterohemorrhagic E. coli (EHEC)
- Shiga-like toxin gene (stx1)
- Shiga-like toxin gene (stx2)
Enteroinvasive E. coli/Shigella (EIEC)
Enteropathogenic E. coli (EPEC)
Enterotoxigenic E. coli (ETEC)
Salmonella enterica
Vibrio parahaemolyticus
Adenovirus 40, 41
Norovirus
Rotavirus
Cryptosporidium parvum
Giardia lamblia

Acceptable Specimen Sources

Anal, rectal, stool swab

Specimen Collection Methods:

Rectal Swab | Stool Specimen Swab

GASTROINTESTINAL

Helicobacter pylori

Helicobacter pylori
Clarithromycin resistance determinant

Acceptable Specimen Sources

Stool swab

Specimen Collection Methods:

Stool Specimen Swab

URINARY TRACT
INFECTION

Urinary Tract Infection

Acinetobacter baumannii
Citrobacter freundii
Enterobacter aerogenes
Enterobacter cloacae
Enterococcus faecalis
Enterococcus faecium

Vancomycin-resistant
Enterococci (VRE)
Escherichia coli
Klebsiella
spp.
Morganella morganii
Proteus mirabilis
Proteus vulgaris
Pseudomonas aeruginosa
Staphylococcus saprophyticus

Acceptable Specimen Sources

Isolate, urine

Specimen Collection Methods:

Clean Catch Urine Specimen